Journals

• Membrane computing simulation of sexually transmitted bacterial infections in hotspots of individuals with various risk behaviors. Marcelino Campos, Juan Carlos  Galán,  Mario Rodríguez-Domínguez,  José M.  Sempere,  Carlos  Llorens,  Fernando  Baquero. Microbiology Spectrum Vol. 12 Issue 2 e02728-23
  DOI:10.1128/spectrum.02728-23

• Modeling Markov sources and hidden Markov models by P systems. José M. Sempere. Journal of Membrane Computing Vol. 5, Issue 3, pp 161-169. 2023.
  DOI:10.1007/s41965-023-00129-6

• Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite. A.I. Hafez, B. Soriano, A.A. Elsayed, R. Futami, R. Ceprian, R. Ramos-Ruiz, G. Martinez, F.J. Roig, M.A. Torres-Font, F. Naya-Catala, J.A. Calduch-Giner, L. Trilla-Fuertes, A. Gamez-Pozo, V. Arnau, J.M. Sempere-Luna, J. Perez-Sanchez, T. Gabaldon, C. Llorens. Genes 14(2):267. 2023
  DOI:10.3390/genes14020267

• Simulating the efficacy of vaccines on the epidemiological dynamics of SARS-CoV-2 in a membrane computing model. Marcelino Campos, José M Sempere, Juan C Galán, Andrés Moya, Rafael Cantón, Carlos Llorens, Fernando Baquero. microLife Vol. 3, uqac018. 2022
  DOI:10.1093/femsml/uqac018

• Simulating epidemics by membrane computing. José M. Sempere, Marcelino Campos. Bulletin of The International Membrance Computing Society, Number 13, pp 91-97. 2022

• Generating networks of genetic processors. Marcelino Campos & José M. Sempere. Genetic Programming and Evolvable Machines Vol. 23, Issue 1 pp 133-155. 2022
  DOI:10.1007/s10710-021-09423-7

• P systems in the time of COVID-19. Fernando Baquero, Marcelino Campos, Carlos Llorens & José M. Sempere. Journal of Membrane Computing Vol. 3, Issue 4, pp 246-257. 2021
  DOI:10.1007/s41965-021-00083-1

• Simulating the impact of non-pharmaceutical interventions limiting transmission in COVID-19 epidemics using a membrane computing model. M.Campos, J.M. Sempere, J.C. Galán, A. Moya, C. Llorens, C. de los Ángeles, F. Baquero-Artigao, R. Cantón, F. Baquero. microLife Vol. 2, uqab011. 2021
  DOI:10.1093/femsml/uqab011

• On the Languages Accepted by Watson-Crick Finite Automata with Delays. José M. Sempere. Mathematics 9(8), 813. 2021
  DOI:10.3390/math9080813

• Distributed Trust, a Blockchain Election Scheme. Antonio M. Larriba , Aleix Cerdà i Cucó, José M. Sempere and Damián López. Informatica. 32(2), pp. 321–355. 2021
   DOI:10.15388/20-INFOR440

• A two authorities electronic vote scheme.  Antonio Larriba, José M. Sempere, Damián López. Computers & Security  Vol. 97, October 2020, 101940
  DOI:10.1016/j.cose.2020.101940

• Simulating the Influence of Conjugative-Plasmid Kinetic Values on the Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model.  Marcelino Campos, Álvaro San Millán, José M. Sempere, Val F. Lanza, Teresa M. Coque, Carlos Llorens, Fernando Baquero. Antimicrobial Agents and Chemotherapy  August 2020, 64(8) e00593-20
  DOI:10.1128/AAC.00593-20

• On Compensation Loops in Genomic Duplications. José M. Sempere. International Journal of Foundations of Computer Science Vol. 31, No.1, pp 133-142. 2020
  DOI:10.1142/S0129054120400092

• Modeling of Decision Trees Through P Systems. José M. Sempere. New Generation Computing 37, pp 325-337. 2019
  DOI:10.1007/s00354-019-00052-4

• Simulating Multilevel Dynamics of Antimicrobial Resistance in a Membrane Computing Model. Marcelino Campos, Rafael Capilla, Fernando Naya, Ricardo Futami, Teresa Coque, Andrés Moya, Val Fernandez-Lanza, Rafael Cantón, José M. Sempere, Carlos Llorens, Fernando Baquero. mBio Jan 2019, 10 (1) e02460-18. 2019
  DOI: 10.1128/mBio.02460-18

• Families of Languages Associated with SN P Systems: Preliminary Ideas, Open Problems. Gh. Păun, José M. Sempere. Bulletin of The International Membrane Computing Society, Number 2, pp 161-164. 2016.

• A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES). Marcelino Campos, Carlos Llorens, José M. Sempere, Ricardo Futami, Irene Rodríguez, Purificación Carrasco, Rafael Capilla, Amparo Latorre, Teresa M. Coque, Andrés Moya and Fernando Baquero Biology Direct Vol. 10(41). 2015
  DOI:10.1186/s13062-015-0070-9

• Solving Combinatorial Problems with Networks of Genetic Processors. Marcelino Campos, José M. Sempere International Journal “Information Technologies and Knowledge” Vol.7 No. 1, pp 65-71. 2013

• Networks of Bio-inspired Processors. Fernando Arroyo Montoro, Juan Castellanos, Victor Mitrana, Eugenio Santos, José M. Sempere Triangle Vol. 7, pp 3-22. 2012
  DOI:10.17345/triangle7.3-22

• Accepting Networks of Genetic Processors are computationally complete. Marcelino Campos, José M. Sempere Theoretical Computer Science Vol. 456, pp 18-29. 2012
  DOI:10.1016/j.tcs.2012.06.028

• GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. Guillermo P. Bernet, Alfonso Muñoz Pomer, Laura Domínguez-Escribá, Laura Covelli, Lucía Bernad, Sukanya Ramasamy, Ricardo Futami, Jose M. Sempere, Andrés Moya and Carlos Llorens Mobile Genetic Elements 1:2, 97-102; July/August 2011
  DOI:10.4161/mge.1.2.17635

• The Spanish Network on Biomolecular and Biocellular Computing: Bio-inspired Natural Computing in Spain. Mario de J. Pérez-Jiménez, Alfonso Ortega de la Puente, José M. Sempere. ERCIM News No. 85, pp 25, 2011

• Complexity-preserving simulations among three variants of accepting networks of evolutionary processors. Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, Ion Petre, Jose M. Sempere. Natural Computing, Vol. 10, No. 1, pp 429-445, 2011
  DOI: 10.1007/s11047-010-9238-5

• Filter Position in Networks of Substitution Processors does not matter. F.Arroyo, J. Castellanos, V. Mitrana, E. Santos, J.M. Sempere. International Journal of Foundations of Computer Science, Vol. 22, No. 1, pp 155-165, 2011
  DOI: 10.1142/S0129054111007915

• The Gypsy Database (GyDB) of mobile genetic elements: release 2.0. Carlos Llorens, Ricardo Futami, Laura Covelli, Laura Dominguez-Escriba, Jose M. Viu, Daniel Tamarit, Jose Aguilar-Rodriguez, Miguel Vicente-Ripolles, Gonzalo Fuster, Guillermo P. Bernet, Florian Maumus, Alfonso Muñoz-Pomer, José M. Sempere, Amparo Latorre, Andres Moya. Nucleic Acids Research Vol. 39, Database issue, D70-D74, 2011
  DOI: 10.1093/nar/gkq1061

• Inference of reversible tree languages. D. López, José M. Sempere, P. García. IEEE Transactions on Systems, Man and Cybernetics – Part B: Cybernetics Vol. 34, No. 4, pp 1658-1665. 2004
  DOI:10.1109/TSMCB.2004.827190

• A Representation Theorem for Languages accepted by Watson-Crick Finite Automata. José M. Sempere. Bulletin of the EATCS 83 pp. 187-191. 2004

• A note on the equivalence and complexity of linear grammars. José M. Sempere. Grammars Vol. 6, Issue 2. pp 115-126. 2003
  DOI:10.1023/A:1026142613465

• Networks of evolutionary processors. Juan Castellanos, Carlos Martín-Vide, Victor Mitrana, José M. Sempere. Acta Informatica 39, 517-529. 2003
  DOI:10.1007/s00236-003-0114-y

• On some characteristic features of linear grammars and their application to the study of their identification and complexity ( PhD Thesis Abstract). José M. Sempere. Bulletin of the EATCS 79 pp 285-287. 2003

• Error correcting analysis for tree languages. Damián López, José M. Sempere, Pedro García. International Journal of Pattern Recognition and Artificial Intelligence Vol. 14, No. 3, pp 357-368. 2000
  DOI:10.1142/S0218001400000234

• On a class of regular-like expressions for linear languages. José M. Sempere. Journal of Automata, Languages and Combinatorics Vol. 5, No. 3, pp 343-354. 2000
  DOI:10.25596/jalc-2000-343

• A McCulloch-Pitts neural net to characterize even linear languages. José M. Sempere, Damián López. Information Processing Letters (56):201-208, 1995
  DOI:0020-0190(95)00153-4